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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_homer_4_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:31:02 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="ghostscript" version="9.07">
        <repository changeset_revision="641d51248b4b" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="perl" version="5.18.1">
        <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="weblogo" version="2.8.2">
        <repository changeset_revision="c1154c64359c" name="package_weblogo_2_8_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="blat" version="35x1">
        <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="homer" version="4.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://biowhat.ucsd.edu/homer/homer.v4.2.zip</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="641d51248b4b" name="package_ghostscript_9_07" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="ghostscript" version="9.07" />
                    </repository>
                    <repository changeset_revision="c1154c64359c" name="package_weblogo_2_8_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="weblogo" version="2.8.2" />
                    </repository>
                    <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="blat" version="35x1" />
                    </repository>
                </action>

                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR/homer</destination_directory>
                </action>

                <action type="set_environment">
                    <environment_variable action="append_to" name="PATH">$INSTALL_DIR/homer/bin</environment_variable>
                    <environment_variable action="append_to" name="PATH">$ENV[WEBLOGO_PATH]</environment_variable>
                    <environment_variable action="append_to" name="PATH">$ENV[GHOSTSCRIPT_PATH]</environment_variable>
                    <environment_variable action="append_to" name="PATH">$ENV[BLAT_PATH]</environment_variable>
                    <environment_variable action="append_to" name="PATH">$ENV[PERL_ROOT_DIR]/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Installing HOMER requires a perl environment. http://biowhat.ucsd.edu/homer/</readme>
    </package>
</tool_dependency>