# HG changeset patch
# User iuc
# Date 1432061938 14400
# Node ID ccc747644181dfe0b7288af1ded1d71155a335a4

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_jellyfish_1_11_11/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09

diff -r 000000000000 -r ccc747644181 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 19 14:58:58 2015 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="jellyfish" version="1.1.11">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz</action>
+                <action type="autoconf"/>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable name="JELLYFISH_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+<![CDATA[
+JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
+]]>
+        </readme>
+    </package>
+</tool_dependency>