Mercurial > repos > iuc > package_kraken_0_10_5

changeset 0:bafddeadd6aa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_kraken_0_10_5/tool_dependencies.xml commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:59:03 -0400
parents
children 89a36b0f718c
files tool_dependencies.xml
diffstat 1 files changed, 33 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 19 14:59:03 2015 -0400
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="kraken" version="0.10.5">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/kraken/kraken-0.10.5-beta-Linux_x86_64.zip</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions>
+                    <action type="download_by_url">https://ccb.jhu.edu/software/kraken/dl/kraken-0.10.5-beta.tgz</action>
+                    <action type="shell_command">install_kraken.sh $INSTALL_DIR/bin</action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+<![CDATA[
+Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained
+through metagenomic studies. Previous attempts by other bioinformatics software to accomplish
+this task have often used sequence alignment or machine learning techniques that were quite
+slow, leading to the development of less sensitive but much faster abundance estimation programs.
+Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers
+and a novel classification algorithm.
+]]>
+        </readme>
+    </package>
+</tool_dependency>