Mercurial > repos > iuc > package_krona_2_5
annotate tool_dependencies.xml @ 0:96d808a49774 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
author | iuc |
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date | Fri, 31 Jul 2015 15:37:43 -0400 |
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96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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changeset
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1 <?xml version="1.0"?> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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changeset
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2 <tool_dependency> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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3 <package name="perl" version="5.18.1"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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4 <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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5 </package> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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6 <package name="krona" version="2.5"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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7 <install version="1.0"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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8 <actions> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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9 <action type="download_by_url">https://depot.galaxyproject.org/package/source/KronaTools-2.5.tar</action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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10 <action type="set_environment_for_install"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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11 <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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12 <package name="perl" version="5.18.1" /> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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13 </repository> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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14 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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15 <action type="move_directory_files"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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16 <source_directory>lib</source_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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17 <destination_directory>$INSTALL_DIR/lib</destination_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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18 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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19 <action type="move_directory_files"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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20 <source_directory>scripts</source_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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21 <destination_directory>$INSTALL_DIR/scripts</destination_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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22 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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23 <action type="move_directory_files"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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24 <source_directory>img</source_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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25 <destination_directory>$INSTALL_DIR/img</destination_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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26 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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27 <action type="move_directory_files"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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28 <source_directory>src</source_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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29 <destination_directory>$INSTALL_DIR/src</destination_directory> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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changeset
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30 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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31 <action type="make_directory">$INSTALL_DIR/bin</action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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32 <action type="shell_command"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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33 for i in ClassifyBLAST GetContigMagnitudes GetLibPath GetTaxIDFromGI \ |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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34 ImportBLAST ImportDiskUsage ImportEC ImportFCP ImportGalaxy \ |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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35 ImportMETAREP-BLAST ImportMETAREP-EC ImportMGRAST ImportPhymmBL \ |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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36 ImportRDP ImportRDPComparison ImportTaxonomy ImportText ImportXML ; do |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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37 ln -s $INSTALL_DIR/scripts/$i.pl $INSTALL_DIR/bin/kt$i |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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38 done |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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39 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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40 <action type="set_environment"> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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41 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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42 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
diff
changeset
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43 </action> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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44 </actions> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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45 </install> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
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46 <readme /> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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47 </package> |
96d808a49774
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
iuc
parents:
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48 </tool_dependency> |