Mercurial > repos > iuc > package_krona_2_5
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
author | iuc |
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date | Fri, 31 Jul 2015 15:37:43 -0400 |
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<?xml version="1.0"?> <tool_dependency> <package name="perl" version="5.18.1"> <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="krona" version="2.5"> <install version="1.0"> <actions> <action type="download_by_url">https://depot.galaxyproject.org/package/source/KronaTools-2.5.tar</action> <action type="set_environment_for_install"> <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> </action> <action type="move_directory_files"> <source_directory>lib</source_directory> <destination_directory>$INSTALL_DIR/lib</destination_directory> </action> <action type="move_directory_files"> <source_directory>scripts</source_directory> <destination_directory>$INSTALL_DIR/scripts</destination_directory> </action> <action type="move_directory_files"> <source_directory>img</source_directory> <destination_directory>$INSTALL_DIR/img</destination_directory> </action> <action type="move_directory_files"> <source_directory>src</source_directory> <destination_directory>$INSTALL_DIR/src</destination_directory> </action> <action type="make_directory">$INSTALL_DIR/bin</action> <action type="shell_command"> for i in ClassifyBLAST GetContigMagnitudes GetLibPath GetTaxIDFromGI \ ImportBLAST ImportDiskUsage ImportEC ImportFCP ImportGalaxy \ ImportMETAREP-BLAST ImportMETAREP-EC ImportMGRAST ImportPhymmBL \ ImportRDP ImportRDPComparison ImportTaxonomy ImportText ImportXML ; do ln -s $INSTALL_DIR/scripts/$i.pl $INSTALL_DIR/bin/kt$i done </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> </action> </actions> </install> <readme /> </package> </tool_dependency>