comparison tool_dependencies.xml @ 2:18e2e2ef0f08 draft default tip

Uploaded

1:d63425547b4c

<?xml version="1.0"?>
<tool_dependency>
    <package name="libxslt" version="1.1.28">
        <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="perl_xml_parser_expat" version="2.41">
        <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="meme" version="4.11.0">
        <install version="1.0">
            <actions>
                <action sha256sum="5dc4841f4816ef25bdb4bd088c76606c1b42726e7d65cc417f0f8c49fe7e237f" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.0_src_all.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="libxslt" version="1.1.28" />
                    </repository>
                    <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="perl_xml_parser_expat" version="2.41" />
                    </repository>
                </action>
                <action type="shell_command">
                    # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
                    sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
                </action>
                <action type="autoconf" />
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>

2:18e2e2ef0f08

<?xml version="1.0"?>
<tool_dependency>
    <package name="libxml2" version="2.9.3">
        <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="libxslt" version="1.1.28">
        <install version="1.0">
            <actions>
                <action sha256sum="5fc7151a57b89c03d7b825df5a0fae0a8d5f05674c0e7cf2937ecec4d54a028c" type="download_by_url">ftp://xmlsoft.org/libxml2/libxslt-1.1.28.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="libxml2" version="2.9.3" />
                    </repository>
                </action>
                <action type="autoconf" />
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[PKG_CONFIG_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$ENV[DYLD_LIBRARY_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[LIBRARY_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[C_INCLUDE_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[CPLUS_INCLUDE_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>