Mercurial > repos > iuc > package_meme_4_11_1

changeset 0:26db01f5b803 draft

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Uploaded
author iuc
date Wed, 22 Jun 2016 07:33:33 -0400
parents
children 336b41a99b8f
files tool_dependencies.xml
diffstat 1 files changed, 35 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jun 22 07:33:33 2016 -0400
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="libxslt" version="1.1.28">
+        <repository changeset_revision="d63425547b4c" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="perl_xml_parser_expat" version="2.41">
+        <repository changeset_revision="5d17b1a12107" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="meme" version="4.11.1">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="62602045b25c8422c59f441025b710629c2fbb602bf618fffeeab5654f521088" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.1_src_all.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="d63425547b4c" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="libxslt" version="1.1.28" />
+                    </repository>
+                    <repository changeset_revision="5d17b1a12107" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="perl_xml_parser_expat" version="2.41" />
+                    </repository>
+                </action>
+                <action type="shell_command">
+                    # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
+                    sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
+                </action>
+                <action type="autoconf" />
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>