Mercurial > repos > iuc > package_mummer_3_23
comparison tool_dependencies.xml @ 1:9ddc606546c3 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_mummer_3_23 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author | iuc |
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date | Fri, 17 Jul 2015 10:38:53 -0400 |
parents | cc6c4d6ebceb |
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0:cc6c4d6ebceb | 1:9ddc606546c3 |
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
17 </action> | 17 </action> |
18 </actions> | 18 </actions> |
19 </install> | 19 </install> |
20 <readme> | 20 <readme> |
21 MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. | |
22 For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, | |
23 using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s | |
24 of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. | |
25 If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate | |
26 alignments based upon the six-frame translations of both input sequences. | |
27 | |
21 http://mummer.sourceforge.net/ | 28 http://mummer.sourceforge.net/ |
22 MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. | |
23 </readme> | 29 </readme> |
24 </package> | 30 </package> |
25 </tool_dependency> | 31 </tool_dependency> |