Mercurial > repos > iuc > package_mummer_3_23

changeset 1:9ddc606546c3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_mummer_3_23 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:38:53 -0400
parents cc6c4d6ebceb
children
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu May 22 08:44:10 2014 -0400
+++ b/tool_dependencies.xml	Fri Jul 17 10:38:53 2015 -0400
@@ -18,8 +18,14 @@
             </actions>
         </install>
         <readme>
+MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. 
+For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds,
+using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s
+of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
+If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate
+alignments based upon the six-frame translations of both input sequences. 
+
 http://mummer.sourceforge.net/
-MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. 
         </readme>
     </package>
 </tool_dependency>