# HG changeset patch
# User iuc
# Date 1437143979 14400
# Node ID 11e44e86927bc841b2481b59e4902169568cc546
# Parent  8f20b47725d85be0958c1234190e73888fb6106f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_muscle_3_8_31 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty

diff -r 8f20b47725d8 -r 11e44e86927b tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Oct 30 11:51:55 2013 -0400
+++ b/tool_dependencies.xml	Fri Jul 17 10:39:39 2015 -0400
@@ -7,8 +7,8 @@
                 <actions os="darwin" architecture="x86_64">
                     <action type="download_by_url">http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_i86darwin64.tar.gz</action>
                     <action type="move_file" rename_to="muscle">
-                        <source>../muscle3.8.31_i86darwin64</source>
-                        <destination>$INSTALL_DIR/muscle</destination>
+                        <source>muscle3.8.31_i86darwin64</source>
+                        <destination>$INSTALL_DIR</destination>
                     </action>
                 </actions>
                 <!-- Download the binaries for MUSCLE compatible with 32-bit OSX. -->
@@ -39,7 +39,7 @@
                 <actions>
                     <action type="download_by_url" target_filename="muscle3.8.31.tar.gz">http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz</action>
                     <!-- When compiling, need to remove the '-static' linker option from the src/mk file used by src/Makefile -->
-                    <action type="shell_command">sed -i 's/-static//g' src/mk</action>
+                    <action type="shell_command">sed -i.bak -e 's/-static//g' src/mk</action>
                     <action type="shell_command">make -C src/</action>
                     <action type="move_file">
                         <source>src/muscle</source>
@@ -56,7 +56,7 @@
 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X MUSCLE
 binaries, which is faster than performing a local compilation,
 avoids any issues with build dependencies, and is more reproducible between
-installations as there is no variability from the compiler or library 
+installations as there is no variability from the compiler or library
 versions.
 If the download attempt fails, compiling MUSCLE from source is attempted.