Mercurial > repos > iuc > package_numpy_1_7

view tool_dependencies.xml @ 1:74c21f9bdc39 draft

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revert the cheetah template until the next stable Galaxy release it out. Fallback to non atlas/lapack numpy.
author bgruening
date Mon, 12 Aug 2013 10:00:18 -0400
parents c75482be1d3a
children 028df1ddd7a2
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<?xml version="1.0"?>
<tool_dependency>
        <package name="numpy" version="1.7.1">
            <install version="1.0">
                <actions>
                    <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
                    <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                    <action type="set_environment">
                        <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
                        </action>
                </actions>
            </install>
            <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
        </package>
</tool_dependency>