Mercurial > repos > iuc > package_numpy_1_9
comparison tool_dependencies.xml @ 2:d6f39c80e75b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Fri, 17 Jul 2015 10:41:25 -0400 |
| parents | 84e97f5cd3ab |
| children | 9cc1138e5e3e |
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| 1:84e97f5cd3ab | 2:d6f39c80e75b |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="atlas" version="3.10.2"> | 3 <package name="atlas" version="3.10.2"> |
| 4 <repository changeset_revision="597c0e54eded" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="numpy" version="1.9"> | 6 <package name="python" version="2.7"> |
| 7 <install version="1.0"> | 7 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 8 <actions> | 8 </package> |
| 9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5=510cee1c6a131e0a9eb759aa2cc62609</action> | 9 <package name="numpy" version="1.9"> |
| 10 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 10 <install version="1.0"> |
| 11 <action type="set_environment_for_install"> | 11 <actions> |
| 12 <repository changeset_revision="597c0e54eded" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | 12 <action type="set_environment_for_install"> |
| 13 <package name="atlas" version="3.10.2" /> | 13 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 14 </repository> | 14 <package name="atlas" version="3.10.2" /> |
| 15 </action> | 15 </repository> |
| 16 <action type="shell_command"> | 16 </action> |
| 17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 17 <action type="setup_python_environment"> |
| 18 export ATLAS=$ATLAS_ROOT_PATH && | 18 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin | 19 <package name="python" version="2.7" /> |
| 20 </action> | 20 </repository> |
| 21 <action type="set_environment"> | 21 <!-- allow downloading and installing an Python package from https://pypi.org/ --> |
| 22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 22 <package>https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz#md5#78842b73560ec378142665e712ae4ad9</package> |
| 23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 23 </action> |
| 24 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> | 24 <action type="set_environment"> |
| 25 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> | 25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 26 </action> | 26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 27 </actions> | 27 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> |
| 28 </install> | 28 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> |
| 29 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> | 29 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> |
| 30 </package> | 30 <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable> |
| 31 </action> | |
| 32 </actions> | |
| 33 </install> | |
| 34 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme> | |
| 35 </package> | |
| 31 </tool_dependency> | 36 </tool_dependency> |