Mercurial > repos > iuc > package_openbabel_2_3

changeset 2:ae369c08a2a7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_openbabel_2_3 commit 2e18fe350712147421228210013814bc0aeec120
author iuc
date Tue, 01 Mar 2016 10:43:16 -0500
parents e5ef70185d24
children
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Apr 20 17:39:23 2014 -0400
+++ b/tool_dependencies.xml	Tue Mar 01 10:43:16 2016 -0500
@@ -1,26 +1,21 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="eigen3" version="3.1.3">
-        <repository changeset_revision="b8ed0e76f501" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="baedf7f82cc3" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="openbabel" version="2.3.2">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action>
-
-                <!-- populate the environment variables from the dependend repos -->
+                <action sha256sum="4eaca26679aa6cc85ebf96af19191472ac63ca442c36b0427b369c3a25705188" type="download_by_url">https://depot.galaxyproject.org/software/openbabel/openbabel_2.3.2_src_all.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="b8ed0e76f501" name="package_eigen_3_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="baedf7f82cc3" name="package_eigen_3_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="eigen3" version="3.1.3" />
                     </repository>
                 </action>
 
-                <!--
-                    Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version.
-                -->
+                <!-- Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. -->
                 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action>
-                <action type="shell_command">make</action>
-                <action type="shell_command">make install</action>
+                <action type="make_install" />
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>