Mercurial > repos > iuc > package_pear_0_9_6
view tool_dependencies.xml @ 0:833c4be8f4d4 draft default tip
Imported from capsule None
author | bgruening |
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date | Wed, 20 May 2015 14:59:47 -0400 |
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<?xml version="1.0"?> <tool_dependency> <package name="pear" version="0.9.6"> <install version="1.0"> <actions_group> <actions architecture="x86_64" os="linux"> <action type="download_by_url">http://sco.h-its.org/exelixis/web/software/pear/files/pear-0.9.6-bin-64.tar.gz</action> <action type="move_file"> <source>pear-0.9.6-bin-64</source> <destination>$INSTALL_DIR/bin/</destination> </action> <action type="shell_command">mv $INSTALL_DIR/bin/pear-0.9.6-bin-64 $INSTALL_DIR/bin/pear</action> </actions> <actions architecture="x86_64" os="darwin"> <action type="download_by_url">http://sco.h-its.org/exelixis/web/software/pear/files/pear-0.9.6-src.tar.gz</action> <action type="autoconf" /> </actions> <action type="set_environment"> <environment_variable action="set_to" name="PEAR_ROOT_DIR">$INSTALL_DIR</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions_group> </install> <readme>PEAR - Paired-End reAd mergeR PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a statistical test for minimizing false-positive results. Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard desktop computer. </readme> </package> </tool_dependency>