Mercurial > repos > iuc > package_progressivemauve_2_4_0

changeset 0:0aeb3a1b5106 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author iuc
date Fri, 17 Jul 2015 14:21:34 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 45 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jul 17 14:21:34 2015 -0400
@@ -0,0 +1,45 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="progressivemauve" version="2.4.0">
+        <install version="1.0">
+            <actions_group>
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_by_url">http://darlinglab.org/mauve/downloads/mauve_linux_2.4.0.tar.gz</action>
+                    <action type="move_file">
+                        <source>linux-x64/progressiveMauve</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>linux-x64/mauveAligner</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
+
+                <actions os="darwin" architecture="x86_64">
+                    <action type="download_by_url">http://darlinglab.org/mauve/downloads/Mauve-2.4.0.dmg </action>
+                    <action type="shell_command">
+                        hdiutil attach Mauve-2.4.0.dmg &amp;&amp;
+                        mkdir -p $INSTALL_DIR/bin &amp;&amp;
+                        cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/progressiveMauve $INSTALL_DIR/bin &amp;&amp;
+                        cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/mauveAligner $INSTALL_DIR/bin &amp;&amp;
+                        hdiutil detach /Volumes/Mauve-2.4.0
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme><![CDATA[
+Mauve is free of charge, open-source software licensed under the GNU GPL.
+
+Mauve is a system for constructing multiple genome alignments in the presence
+of large-scale evolutionary events such as rearrangement and inversion.
+Multiple genome alignments provide a basis for research into comparative
+genomics and the study of genome-wide evolutionary dynamics.
+
+http://darlinglab.org/mauve/
+]]>
+        </readme>
+    </package>
+</tool_dependency>