Mercurial > repos > iuc > package_python_2_7_deeptools_1_5_11
changeset 1:01eb49da8dcf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit b506753c5a6c755d070d36eab553e79692b2f232
| author | iuc |
|---|---|
| date | Mon, 19 Oct 2015 19:26:03 -0400 |
| parents | 315b83e21eea |
| children | cad615e7e064 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 16 insertions(+), 34 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Oct 19 16:58:29 2015 -0400 +++ b/tool_dependencies.xml Mon Oct 19 19:26:03 2015 -0400 @@ -4,48 +4,48 @@ <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="numpy" version="1.9"> - <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9f9eface3306" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="matplotlib" version="1.4"> - <repository changeset_revision="8f39fc9cadb1" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="89e6da883c60" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="scipy" version="0.14"> - <repository changeset_revision="f9a80a69d278" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="92d190ed366e" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="pysam" version="0.8.3"> - <repository changeset_revision="ee642ed79a3b" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="7defbb2032a1" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bx-python" version="0.7.2"> - <repository changeset_revision="8b54b30f3cd4" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9e4101fb24af" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="ucsc_tools" version="312"> <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="python" version="2.7.10"> - <repository changeset_revision="b1a672a0df3c" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="73631e818d3d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="deepTools" version="1.5.11"> <install version="1.0"> <actions> <action type="setup_python_environment"> - <repository changeset_revision="b1a672a0df3c" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="python" version="2.7.10" /> - </repository> - <repository changeset_revision="ee642ed79a3b" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="73631e818d3d" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="2.7.10" /> + </repository> + <repository changeset_revision="7defbb2032a1" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="pysam" version="0.8.3" /> </repository> - <repository changeset_revision="8b54b30f3cd4" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="bx-python" version="0.7.2" /> - </repository> - <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="9f9eface3306" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="numpy" version="1.9" /> </repository> - <repository changeset_revision="8f39fc9cadb1" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="89e6da883c60" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="matplotlib" version="1.4" /> </repository> - <repository changeset_revision="f9a80a69d278" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="92d190ed366e" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="scipy" version="0.14" /> </repository> + <repository changeset_revision="9e4101fb24af" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="bx-python" version="0.7.2" /> + </repository> <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="samtools" version="0.1.19" /> </repository> @@ -61,24 +61,6 @@ <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable> <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable> <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable> - <!-- include samtools into PATH --> - <environment_variable action="prepend_to" name="PATH">$ENV[BAM_ROOT]/bin</environment_variable> - <!-- include numpy --> - <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> - <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> - <!-- include matplotlib --> - <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> - <!-- include scipy --> - <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> - <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> - <!-- include bx-python --> - <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_BX_PYTHON]</environment_variable> - <environment_variable action="prepend_to" name="PATH">$ENV[PATH_BX_PYTHON]</environment_variable> - <!-- include pysam --> - <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_PYSAM]</environment_variable> - <environment_variable action="prepend_to" name="PATH">$ENV[PATH_PYSAM]</environment_variable> - <!-- include ucsc tools --> - <environment_variable action="prepend_to" name="PATH">$ENV[UCSC_TOOLS_ROOT_PATH]</environment_variable> <!-- libpng lib path --> <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>