Mercurial > repos > iuc > package_python_2_7_deeptools_2_3_3

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
author iuc
date Fri, 12 Aug 2016 05:08:23 -0400
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eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.9">
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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4 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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5 </package>
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6 <package name="pybigwig" version="0.2.8">
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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7 <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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8 </package>
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9 <package name="matplotlib" version="1.4">
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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10 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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11 </package>
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12 <package name="scipy" version="0.14">
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13 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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14 </package>
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15 <package name="pysam" version="0.8.3">
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16 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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17 </package>
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18 <package name="python" version="2.7.10">
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19 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
eb87fc6d5b73 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_3 commit 8816c9eade8f79b6710cbece027b91e724ce3d7f
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20 </package>
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21 <package name="deepTools" version="2.3.3">
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22 <install version="1.0">
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23 <actions>
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24 <action type="setup_python_environment">
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25 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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26 <package name="python" version="2.7.10" />
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27 </repository>
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28 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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29 <package name="pysam" version="0.8.3" />
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30 </repository>
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31 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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32 <package name="numpy" version="1.9" />
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33 </repository>
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34 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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35 <package name="matplotlib" version="1.4" />
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36 </repository>
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37 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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38 <package name="scipy" version="0.14" />
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39 </repository>
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40 <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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41 <package name="pybigwig" version="0.2.8" />
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42 </repository>
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43 <package sha256sum="047511c9a6231207fa6ee49f901f9afa0f81c57e4bc03840392e48ed67d97203">https://pypi.python.org/packages/c1/03/982c3656e85e6f264b37d5f6e594d030d6dd99064913eb423d2b40fcebe3/deepTools-2.3.3.tar.gz</package>
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44 </action>
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45
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46 <action type="set_environment">
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47 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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48 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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49 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
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50 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
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51 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
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52 <!-- libpng lib path -->
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53 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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54 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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55 <!-- disable the config file of deepTools -->
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56 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
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57 </action>
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58 </actions>
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59 </install>
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60 <readme>
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61 Installation of deepTools from Fidel Ramirez.
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62 https://github.com/fidelram/deepTools
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63 </readme>
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64 </package>
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65 </tool_dependency>