Mercurial > repos > iuc > package_python_2_7_deeptools_2_3_5
changeset 0:c3e87c8140fe draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_5 commit ff6e30e67657bc40a4e5b590bd93bc23c39534ee
author | iuc |
---|---|
date | Mon, 19 Sep 2016 16:51:43 -0400 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 71 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Sep 19 16:51:43 2016 -0400 @@ -0,0 +1,71 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.9"> + <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pybigwig" version="0.2.8"> + <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="twobitreader" version="3.1.4"> + <repository changeset_revision="ca96776cd2f2" name="package_python_2_7_10_twobitreader_3_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="matplotlib" version="1.4"> + <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="scipy" version="0.14"> + <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pysam" version="0.8.3"> + <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="python" version="2.7.10"> + <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="deepTools" version="2.3.5"> + <install version="1.0"> + <actions> + <action type="setup_python_environment"> + <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="2.7.10" /> + </repository> + <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="pysam" version="0.8.3" /> + </repository> + <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.9" /> + </repository> + <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="matplotlib" version="1.4" /> + </repository> + <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="scipy" version="0.14" /> + </repository> + <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="pybigwig" version="0.2.8" /> + </repository> + <repository changeset_revision="ca96776cd2f2" name="package_python_2_7_10_twobitreader_3_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="twobitreader" version="3.1.4" /> + </repository> + <package sha256sum="ecd01bc47292c1cdef241040165ab7714994c48f7a75d3f52e185dfa876774bb">https://pypi.python.org/packages/e8/12/9985140e3e06e4946ce05cdb67b722aad4ac0ebb38d31ff7a7c80b54cb1a/deepTools-2.3.5.tar.gz</package> + </action> + + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable> + <!-- libpng lib path --> + <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> + <!-- disable the config file of deepTools --> + <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable> + </action> + </actions> + </install> + <readme> + Installation of deepTools from Fidel Ramirez. + https://github.com/fidelram/deepTools + </readme> + </package> +</tool_dependency>