comparison tool_dependencies.xml @ 0:05f46fef1ea5 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_6 commit 410b18fb408d2979d2f90f4bf0b209a66b3df624

0:05f46fef1ea5

<?xml version="1.0"?>
<tool_dependency>
    <package name="numpy" version="1.9">
        <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="pybigwig" version="0.2.8">
        <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="twobitreader" version="3.1.4">
        <repository changeset_revision="ca96776cd2f2" name="package_python_2_7_10_twobitreader_3_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="matplotlib" version="1.4">
        <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="scipy" version="0.14">
        <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="pysam" version="0.8.3">
        <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="python" version="2.7.10">
        <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="deepTools" version="2.3.6">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="pysam" version="0.8.3" />
                    </repository>
                    <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="matplotlib" version="1.4" />
                    </repository>
                    <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.14" />
                    </repository>
                    <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="pybigwig" version="0.2.8" />
                    </repository>
                    <repository changeset_revision="ca96776cd2f2" name="package_python_2_7_10_twobitreader_3_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="twobitreader" version="3.1.4" />
                    </repository>
                    <package sha256sum="2d1f207d99230abcda632f6f23f8bd482aa7ecc6de6284c7096bb8d4facdd44c">https://pypi.python.org/packages/75/cc/52774ca1df27e4b0dc503972f782fd01d8ee611d8ad89abfe7b36d7c633f/deepTools-2.3.6.tar.gz</package>
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
                    <!-- libpng lib path -->
                    <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <!-- disable the config file of deepTools -->
                    <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
                </action>
             </actions>
         </install>
         <readme>
            Installation of deepTools from Fidel Ramirez.
            https://github.com/fidelram/deepTools
         </readme>
     </package>
</tool_dependency>