Mercurial > repos > iuc > package_python_2_7_pysam_0_8_3
changeset 0:ee642ed79a3b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_pysam_0_8_3 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
| author | iuc |
|---|---|
| date | Fri, 17 Jul 2015 14:26:36 -0400 |
| parents | |
| children | 7defbb2032a1 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 28 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 17 14:26:36 2015 -0400 @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="python" version="2.7"> + <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pysam" version="0.8.3"> + <install version="1.0"> + <actions> + <action type="setup_python_environment"> + <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="2.7" /> + </repository> + <!-- allow downloading and installing an Python package from https://pypi.org/ --> + <package>https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz</package> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_PYSAM">$INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="PATH_PYSAM">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="PYSAM_ROOT_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH. + </readme> + </package> +</tool_dependency>