Mercurial > repos > iuc > package_python_2_7_qiime_1_9_1

changeset 0:a13eab58d350 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_qiime_1_9_1 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa
author iuc
date Wed, 02 Dec 2015 17:38:34 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 97 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Dec 02 17:38:34 2015 -0500
@@ -0,0 +1,97 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pandas" version="0.16">
+        <repository changeset_revision="ea929a7f2976" name="package_python_2_7_pandas_0_16" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="matplotlib" version="1.4">
+        <repository changeset_revision="dc81747daa93" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="scipy" version="0.14">
+        <repository changeset_revision="4d50eedb08bc" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="requests" version="2.7">
+        <repository changeset_revision="23231406106f" name="package_python_2_7_requests_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="qiime" version="1.9.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                    <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                    <repository changeset_revision="ea929a7f2976" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="pandas" version="0.16" />
+                    </repository>
+                    <repository changeset_revision="dc81747daa93" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="matplotlib" version="1.4" />
+                    </repository>
+                    <repository changeset_revision="4d50eedb08bc" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.14" />
+                    </repository>
+                    <repository changeset_revision="23231406106f" name="package_python_2_7_requests_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="requests" version="2.7" />
+                    </repository>
+                    <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7.10" />
+                    </repository>
+                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+
+                    <package md5sum="25337740507cb855ad58bfcf60f7710e">https://pypi.python.org/packages/source/p/pickleshare/pickleshare-0.5.tar.gz</package>
+                    <package md5sum="f9c1fab00fd981be588fc32759f474e3">https://pypi.python.org/packages/source/s/simplegeneric/simplegeneric-0.8.1.zip</package>
+                    <package md5sum="27df56a921848686cf52766177a434f2">https://pypi.python.org/packages/source/t/traitlets/traitlets-4.0.0.tar.gz</package>
+                    <package md5sum="dd3a0669e1e6f09699eefa2c7fbd9756">https://pypi.python.org/packages/source/d/decorator/decorator-4.0.4.tar.gz</package>
+
+                    <package md5sum="49e83e8fee9ac1d356a634707a62e294">https://pypi.python.org/packages/source/s/setuptools_scm/setuptools_scm-1.8.0.tar.bz2</package>
+                    <package md5sum="31d07ac861284f8148a9041064852371">https://pypi.python.org/packages/source/p/path.py/path.py-8.1.2.tar.gz</package>
+
+                    <package md5sum="0de72541d3f1374b795472fed841dce8">https://pypi.python.org/packages/source/p/pexpect/pexpect-3.3.tar.gz</package>
+                    <package md5sum="c2fecbcf1c0fbdc82625c77a50733dd6">https://pypi.python.org/packages/source/i/ipython/ipython-4.0.0.tar.gz</package>
+                    <package md5sum="9a8afbe0978adbcbfcb3b35b2d015a56">https://pypi.python.org/packages/source/i/ipython_genutils/ipython_genutils-0.1.0.tar.gz</package>
+                    <package md5sum="bc7173f5ccec8e6125e3b68f0285eb8a">https://pypi.python.org/packages/source/p/pbr/pbr-1.8.0.tar.gz</package>
+                    <package md5sum="ff1c72b380fc46dfce16b8beb3b9c197">https://github.com/bgruening/download_store/raw/master/qiime/lockfile-0.10.2.tar.gz</package>
+                    <package md5sum="a509574c81e254d1db300ecc1542183c">https://pypi.python.org/packages/source/C/CacheControl/CacheControl-0.11.5.tar.gz</package>
+                    <package md5sum="27d6f711ae0db6cfd1eb37f95621dfb5">https://pypi.python.org/packages/source/b/bz2file/bz2file-0.98.tar.gz</package>
+                    <package md5sum="ecdfa0bc89e0c04c9d4d39cac9984498">https://pypi.python.org/packages/source/c/cogent/cogent-1.5.3.tgz</package>
+                    <package md5sum="ef2c4d6e2c5dc0458fe604a91f721aaa">https://pypi.python.org/packages/source/n/natsort/natsort-4.0.3.tar.gz</package>
+                    <package md5sum="6f1744d8d3f333eb2dbe81026d4dcb1b">https://pypi.python.org/packages/source/p/pynast/pynast-1.2.2.tar.gz</package>
+                    <package md5sum="f949d1aef3d17d022dbc7105ade1851e">https://pypi.python.org/packages/source/b/biom-format/biom-format-2.1.4.tar.gz</package>
+                    <package md5sum="9b763cae89fe7b938b8acab4b39b92ba">https://pypi.python.org/packages/source/e/emperor/emperor-0.9.51.tar.gz</package>
+                    <package md5sum="25b7bc209c1e52be16efad295bd37ed4">https://pypi.python.org/packages/source/q/qcli/qcli-0.1.1.tar.gz</package>
+                    <package md5sum="ef2b0bee1e8c037a535627a33e304d61">https://pypi.python.org/packages/source/b/burrito/burrito-0.9.1.tar.gz</package>
+                    <package md5sum="ea65051e674aedfad8bbfdfa63f2c4d8">https://pypi.python.org/packages/source/b/burrito-fillings/burrito-fillings-0.1.1.tar.gz</package>
+                    <package md5sum="4a5ccf5930690478de1eb881e8030bff">https://pypi.python.org/packages/source/q/qiime-default-reference/qiime-default-reference-0.1.3.tar.gz</package>
+                    <package md5sum="ea687207db25f65552061db4a2c6727d">https://pypi.python.org/packages/source/c/contextlib2/contextlib2-0.4.0.tar.gz</package>
+                    <package md5sum="a68eb3c90b3b76714c5ceb8c09ea3a06">https://pypi.python.org/packages/source/f/future/future-0.15.2.tar.gz</package>
+                    <package md5sum="4d3ad0ff07b61373d2cefc89c5d0b20b">https://pypi.python.org/packages/source/n/nose/nose-1.3.7.tar.gz</package>
+                    <package md5sum="476881ef4012262dfc8adc645ee786c4">https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz</package>
+                    <package md5sum="ff047a16dafeaa895bedef80a74c3728">https://pypi.python.org/packages/source/p/pytz/pytz-2015.6.tar.gz</package>
+                    <package md5sum="4ef68e1c485b09e9f034e10473e5add2">https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.2.tar.gz</package>
+                    <package md5sum="2bb1148468d3e5129fa8ff5b29cbeaa3">https://pypi.python.org/packages/source/s/scikit-bio/scikit-bio-0.2.3.tar.gz</package>
+                    <package md5sum="32d4db2b2c888dbbfc6aa33f02725526">https://pypi.python.org/packages/source/q/qiime/qiime-1.9.1.tar.gz</package>
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_PANDAS]</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_REQUESTS]</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_QIME">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="QIIME_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            QIIME: Quantitative Insights Into Microbial Ecology
+            http://www.qiime.org
+        </readme>
+    </package>
+</tool_dependency>