view tool_dependencies.xml @ 3:e0be56637f23 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa

<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.9">
        <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="scipy" version="0.14">
        <repository changeset_revision="4d50eedb08bc" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="matplotlib" version="1.4">
        <repository changeset_revision="dc81747daa93" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="scikit_learn" version="0.15">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                   <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                   </repository>
                    <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <repository changeset_revision="4d50eedb08bc" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.14" />
                    </repository>
                    <repository changeset_revision="dc81747daa93" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="matplotlib" version="1.4" />
                    </repository>
                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
                    <package md5sum="d9822ad0238e17b382a3c756ea94fe0d">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz</package>
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
                    <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        Compiling scikit-learn requires a C compiler (typically gcc). 
        The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
        
        Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
        </readme>
    </package>
</tool_dependency>