Mercurial > repos > iuc > package_python_2_7_scipy_0_14
comparison tool_dependencies.xml @ 0:f9a80a69d278 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author | iuc |
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date | Fri, 17 Jul 2015 14:26:16 -0400 |
parents | |
children | 92d190ed366e |
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-1:000000000000 | 0:f9a80a69d278 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="atlas" version="3.10.2"> | |
4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="numpy" version="1.9"> | |
7 <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 <package name="python" version="2.7"> | |
10 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
11 </package> | |
12 <package name="scipy" version="0.14"> | |
13 <install version="1.0"> | |
14 <actions> | |
15 <action type="setup_python_environment"> | |
16 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
17 <package name="python" version="2.7" /> | |
18 </repository> | |
19 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
20 <package name="atlas" version="3.10.2" /> | |
21 </repository> | |
22 <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
23 <package name="numpy" version="1.9" /> | |
24 </repository> | |
25 <!-- allow downloading and installing an Python package from https://pypi.org/ --> | |
26 <package>https://pypi.python.org/packages/source/s/scipy/scipy-0.14.1.tar.gz#md5#1bfedd3197b3e3f8cd131ae2c06a1bf5</package> | |
27 </action> | |
28 <action type="set_environment"> | |
29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> | |
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
31 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
33 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> | |
34 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable> | |
35 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR</environment_variable> | |
36 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable> | |
37 <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable> | |
38 </action> | |
39 </actions> | |
40 </install> | |
41 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme> | |
42 </package> | |
43 </tool_dependency> |