comparison tool_dependencies.xml @ 0:f9a80a69d278 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scipy_0_14 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author iuc
date Fri, 17 Jul 2015 14:26:16 -0400
parents
children 92d190ed366e
comparison
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-1:000000000000 0:f9a80a69d278
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="atlas" version="3.10.2">
4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="numpy" version="1.9">
7 <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="python" version="2.7">
10 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="scipy" version="0.14">
13 <install version="1.0">
14 <actions>
15 <action type="setup_python_environment">
16 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
17 <package name="python" version="2.7" />
18 </repository>
19 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
20 <package name="atlas" version="3.10.2" />
21 </repository>
22 <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
23 <package name="numpy" version="1.9" />
24 </repository>
25 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
26 <package>https://pypi.python.org/packages/source/s/scipy/scipy-0.14.1.tar.gz#md5#1bfedd3197b3e3f8cd131ae2c06a1bf5</package>
27 </action>
28 <action type="set_environment">
29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
31 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
32 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
33 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
34 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
35 <environment_variable action="set_to" name="PYTHONPATH_SCIPY">$INSTALL_DIR</environment_variable>
36 <environment_variable action="set_to" name="PATH_SCIPY">$INSTALL_DIR/bin</environment_variable>
37 <environment_variable action="set_to" name="SCIPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
38 </action>
39 </actions>
40 </install>
41 <readme>Compiling scipy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for scipy can be accessed through PYTHONPATH_SCIPY and the binaries with PATH_SCIPY.</readme>
42 </package>
43 </tool_dependency>