Mercurial > repos > iuc > package_r_3_0_1
comparison tool_dependencies.xml @ 5:59b82e6e0801 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author | iuc |
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date | Fri, 17 Jul 2015 10:51:04 -0400 |
parents | c5ff6dd33c79 |
children |
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4:c5ff6dd33c79 | 5:59b82e6e0801 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool_dependency> | 2 <tool_dependency> |
3 <!--<package name="readline" version="6.2"> | 3 <package name="readline" version="6.2"> |
4 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" /> | 4 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
5 </package>--> | 5 </package> |
6 <package name="ncurses" version="5.9"> | |
7 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
6 <package name="R_3_0_1" version="3.0.1"> | 9 <package name="R_3_0_1" version="3.0.1"> |
7 <install version="1.0"> | 10 <install version="1.0"> |
8 <actions> | 11 <actions> |
9 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> | 12 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> |
10 <!--<action type="set_environment_for_install"> | 13 <action type="set_environment_for_install"> |
11 <repository name="package_readline_6_2" owner="iuc"> | 14 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
12 <package name="readline" version="6.2" /> | 15 <package name="readline" version="6.2" /> |
13 </repository> | 16 </repository> |
14 </action>--> | 17 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
18 <package name="ncurses" version="5.9" /> | |
19 </repository> | |
20 </action> | |
15 | 21 |
16 <action type="shell_command"> | 22 <action type="shell_command"> |
17 ./configure --with-readline=no --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/ | 23 ./configure CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/ |
18 </action> | 24 </action> |
19 <action type="shell_command">make</action> | 25 <action type="shell_command">make</action> |
20 <action type="shell_command">make install</action> | 26 <action type="shell_command">make install</action> |
21 <action type="set_environment"> | 27 <action type="set_environment"> |
22 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> | 28 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable> |
23 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | 29 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> |
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> |
25 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> | 31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> |
26 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> | 32 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> |
27 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable> | 33 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable> |