Mercurial > repos > iuc > package_r_3_1_2
annotate tool_dependencies.xml @ 3:c987143177d4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
author | iuc |
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date | Wed, 04 Nov 2015 09:57:12 -0500 |
parents | 9f2fddb9d6e2 |
children | 4d2fd1413b56 |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <package name="R" version="3.1.2"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <actions architecture="x86_64" os="linux"> | |
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.1.2-Linux-x84_64.tgz</action> | |
8 <action type="move_directory_files"> | |
9 <source_directory>.</source_directory> | |
10 <destination_directory>$INSTALL_DIR</destination_directory> | |
11 </action> | |
12 <action type="set_environment"> | |
13 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable> | |
14 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable> | |
15 </action> | |
16 </actions> | |
17 <actions architecture="x86_64" os="darwin"> | |
2
9f2fddb9d6e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action> |
9f2fddb9d6e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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19 <package name="readline" version="6.2"> |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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20 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 21 </package> |
22 <package name="libpng" version="1.6.7"> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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2
diff
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23 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 24 </package> |
25 <package name="cairo" version="1.12.14"> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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diff
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26 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 27 </package> |
28 <package name="pixman" version="0.32.4"> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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diff
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29 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 30 </package> |
31 <package name="freetype" version="2.5.2"> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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2
diff
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32 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 33 </package> |
2
9f2fddb9d6e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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34 <package name="ncurses" version="5.9"> |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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35 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
2
9f2fddb9d6e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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36 </package> |
0 | 37 <action type="set_environment_for_install"> |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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38 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 39 <package name="readline" version="6.2" /> |
40 </repository> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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41 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 42 <package name="libpng" version="1.6.7" /> |
43 </repository> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
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44 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 45 <package name="cairo" version="1.12.14" /> |
46 </repository> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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47 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 48 <package name="pixman" version="0.32.4" /> |
49 </repository> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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50 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 51 <package name="freetype" version="2.5.2" /> |
52 </repository> | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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53 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
2
9f2fddb9d6e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
parents:
1
diff
changeset
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54 <package name="ncurses" version="5.9" /> |
9f2fddb9d6e2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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55 </repository> |
0 | 56 </action> |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
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changeset
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57 <action type="shell_command"> |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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changeset
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58 export LDFLAGS="-L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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59 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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60 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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61 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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62 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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63 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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64 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
changeset
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65 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && |
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
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66 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && |
0 | 67 ./configure --with-tcltk \ |
68 --with-blas \ | |
69 --with-lapack \ | |
70 --with-readline \ | |
71 --with-cairo \ | |
72 --with-libpng \ | |
73 --without-x \ | |
74 --enable-R-shlib \ | |
75 --disable-R-framework \ | |
76 --libdir=$INSTALL_DIR/lib \ | |
77 --prefix=$INSTALL_DIR | |
3
c987143177d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
iuc
parents:
2
diff
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78 </action> |
0 | 79 <action type="make_install" /> |
1 | 80 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> |
81 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> | |
0 | 82 </actions> |
83 <action type="set_environment"> | |
84 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable> | |
85 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable> | |
86 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable> | |
87 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable> | |
88 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> | |
89 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> | |
90 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> | |
91 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | |
92 <environment_variable action="set_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> | |
93 <environment_variable action="set_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> | |
94 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
95 </action> | |
96 </actions_group> | |
97 </install> | |
98 <readme> | |
99 The precompiled versions of this package were built 2014-12-21. | |
100 R is a free software environment for statistical computing and graphics. | |
101 NOTE: See custom compilation options above. | |
102 </readme> | |
103 </package> | |
104 </tool_dependency> |