Mercurial > repos > iuc > package_r_3_1_2
comparison tool_dependencies.xml @ 3:c987143177d4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit b2bcd58af12d07f49a70215fd331eaa0a135d0c8
author | iuc |
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date | Wed, 04 Nov 2015 09:57:12 -0500 |
parents | 9f2fddb9d6e2 |
children | 4d2fd1413b56 |
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2:9f2fddb9d6e2 | 3:c987143177d4 |
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15 </action> | 15 </action> |
16 </actions> | 16 </actions> |
17 <actions architecture="x86_64" os="darwin"> | 17 <actions architecture="x86_64" os="darwin"> |
18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action> | 18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action> |
19 <package name="readline" version="6.2"> | 19 <package name="readline" version="6.2"> |
20 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" /> | 20 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
21 </package> | 21 </package> |
22 <package name="libpng" version="1.6.7"> | 22 <package name="libpng" version="1.6.7"> |
23 <repository name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" /> | 23 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
24 </package> | 24 </package> |
25 <package name="cairo" version="1.12.14"> | 25 <package name="cairo" version="1.12.14"> |
26 <repository name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" /> | 26 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
27 </package> | 27 </package> |
28 <package name="pixman" version="0.32.4"> | 28 <package name="pixman" version="0.32.4"> |
29 <repository name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" /> | 29 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
30 </package> | 30 </package> |
31 <package name="freetype" version="2.5.2"> | 31 <package name="freetype" version="2.5.2"> |
32 <repository name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" /> | 32 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
33 </package> | 33 </package> |
34 <package name="ncurses" version="5.9"> | 34 <package name="ncurses" version="5.9"> |
35 <repository name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" /> | 35 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
36 </package> | 36 </package> |
37 <action type="set_environment_for_install"> | 37 <action type="set_environment_for_install"> |
38 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" > | 38 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
39 <package name="readline" version="6.2" /> | 39 <package name="readline" version="6.2" /> |
40 </repository> | 40 </repository> |
41 <repository name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" > | 41 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
42 <package name="libpng" version="1.6.7" /> | 42 <package name="libpng" version="1.6.7" /> |
43 </repository> | 43 </repository> |
44 <repository name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" > | 44 <repository changeset_revision="b39299b4b6e1" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
45 <package name="cairo" version="1.12.14" /> | 45 <package name="cairo" version="1.12.14" /> |
46 </repository> | 46 </repository> |
47 <repository name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" > | 47 <repository changeset_revision="3d44a209a6b9" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
48 <package name="pixman" version="0.32.4" /> | 48 <package name="pixman" version="0.32.4" /> |
49 </repository> | 49 </repository> |
50 <repository name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" > | 50 <repository changeset_revision="58782940c411" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
51 <package name="freetype" version="2.5.2" /> | 51 <package name="freetype" version="2.5.2" /> |
52 </repository> | 52 </repository> |
53 <repository name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" > | 53 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
54 <package name="ncurses" version="5.9" /> | 54 <package name="ncurses" version="5.9" /> |
55 </repository> | 55 </repository> |
56 </action> | 56 </action> |
57 <action type="shell_command"><![CDATA[ | 57 <action type="shell_command"> |
58 export LDFLAGS="-L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" && | 58 export LDFLAGS="-L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" && |
59 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" && | 59 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" && |
60 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" && | 60 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" && |
61 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && | 61 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && |
62 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && | 62 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && |
63 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && | 63 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && |
64 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && | 64 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && |
65 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && | 65 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && |
66 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && | 66 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH" && |
67 ./configure --with-tcltk \ | 67 ./configure --with-tcltk \ |
68 --with-blas \ | 68 --with-blas \ |
69 --with-lapack \ | 69 --with-lapack \ |
70 --with-readline \ | 70 --with-readline \ |
71 --with-cairo \ | 71 --with-cairo \ |
73 --without-x \ | 73 --without-x \ |
74 --enable-R-shlib \ | 74 --enable-R-shlib \ |
75 --disable-R-framework \ | 75 --disable-R-framework \ |
76 --libdir=$INSTALL_DIR/lib \ | 76 --libdir=$INSTALL_DIR/lib \ |
77 --prefix=$INSTALL_DIR | 77 --prefix=$INSTALL_DIR |
78 ]]></action> | 78 </action> |
79 <action type="make_install" /> | 79 <action type="make_install" /> |
80 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> | 80 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> |
81 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> | 81 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> |
82 </actions> | 82 </actions> |
83 <action type="set_environment"> | 83 <action type="set_environment"> |