Mercurial > repos > iuc > package_r_3_2_1
comparison tool_dependencies.xml @ 4:d9f7d84125b7 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_2_1 commit 6e948a2ecc1da6479c3df18609ec42de643b4d0a
author | iuc |
---|---|
date | Fri, 13 May 2016 05:04:26 -0400 |
parents | d0bf97420fb5 |
children |
comparison
equal
deleted
inserted
replaced
3:d0bf97420fb5 | 4:d9f7d84125b7 |
---|---|
2 <tool_dependency> | 2 <tool_dependency> |
3 <package name="R" version="3.2.1"> | 3 <package name="R" version="3.2.1"> |
4 <install version="1.0"> | 4 <install version="1.0"> |
5 <actions_group> | 5 <actions_group> |
6 <actions architecture="x86_64" os="linux"> | 6 <actions architecture="x86_64" os="linux"> |
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.2.1-Linux-x86_64.tar.gz</action> | 7 <action sha256sum="0a27c632b6aacacfd96264ec815dfef4a68bfa807c48d90fa1eb6600872199e0" type="download_by_url">https://depot.galaxyproject.org/software/r/r_3.2.1_linux_x64.tar.gz</action> |
8 <action type="move_directory_files"> | 8 <action type="move_directory_files"> |
9 <source_directory>.</source_directory> | 9 <source_directory>.</source_directory> |
10 <destination_directory>$INSTALL_DIR</destination_directory> | 10 <destination_directory>$INSTALL_DIR</destination_directory> |
11 </action> | 11 </action> |
12 <action type="shell_command"> | 12 <action type="shell_command"> |
32 </action> | 32 </action> |
33 </actions> | 33 </actions> |
34 <actions> | 34 <actions> |
35 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action> | 35 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action> |
36 <package name="atlas" version="3.10.2"> | 36 <package name="atlas" version="3.10.2"> |
37 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 37 <repository changeset_revision="f27d2f8761ae" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
38 </package> | 38 </package> |
39 <package name="readline" version="6.3"> | 39 <package name="readline" version="6.3"> |
40 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 40 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
41 </package> | 41 </package> |
42 <package name="libpng" version="1.6.7"> | 42 <package name="libpng" version="1.6.7"> |
43 <repository changeset_revision="05df724aefbb" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 43 <repository changeset_revision="588666932a32" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
44 </package> | 44 </package> |
45 <package name="cairo" version="1.12.14"> | 45 <package name="cairo" version="1.12.14"> |
46 <repository changeset_revision="0a73735c3161" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 46 <repository changeset_revision="0a73735c3161" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
47 </package> | 47 </package> |
48 <package name="pixman" version="0.32.6"> | 48 <package name="pixman" version="0.32.6"> |
49 <repository changeset_revision="06f701aa92e2" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 49 <repository changeset_revision="06f701aa92e2" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
50 </package> | 50 </package> |
51 <package name="freetype" version="2.5.2"> | 51 <package name="freetype" version="2.5.2"> |
52 <repository changeset_revision="3b09e7916896" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 52 <repository changeset_revision="1e86d1cf79a4" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
53 </package> | 53 </package> |
54 <package name="ncurses" version="6.0"> | 54 <package name="ncurses" version="6.0"> |
55 <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 55 <repository changeset_revision="0efde9889efd" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
56 </package> | 56 </package> |
57 <package name="fontconfig" version="2.11.1"> | 57 <package name="fontconfig" version="2.11.1"> |
58 <repository changeset_revision="2ce32675340e" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 58 <repository changeset_revision="466900d2014a" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
59 </package> | 59 </package> |
60 <action type="set_environment_for_install"> | 60 <action type="set_environment_for_install"> |
61 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 61 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
62 <package name="readline" version="6.3" /> | 62 <package name="readline" version="6.3" /> |
63 </repository> | 63 </repository> |
64 <repository changeset_revision="05df724aefbb" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 64 <repository changeset_revision="588666932a32" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
65 <package name="libpng" version="1.6.7" /> | 65 <package name="libpng" version="1.6.7" /> |
66 </repository> | 66 </repository> |
67 <repository changeset_revision="0a73735c3161" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 67 <repository changeset_revision="0a73735c3161" name="package_cairo_1_12_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
68 <package name="cairo" version="1.12.14" /> | 68 <package name="cairo" version="1.12.14" /> |
69 </repository> | 69 </repository> |
70 <repository changeset_revision="06f701aa92e2" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 70 <repository changeset_revision="06f701aa92e2" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
71 <package name="pixman" version="0.32.6" /> | 71 <package name="pixman" version="0.32.6" /> |
72 </repository> | 72 </repository> |
73 <repository changeset_revision="3b09e7916896" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 73 <repository changeset_revision="1e86d1cf79a4" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
74 <package name="freetype" version="2.5.2" /> | 74 <package name="freetype" version="2.5.2" /> |
75 </repository> | 75 </repository> |
76 <repository changeset_revision="c921f7ce9ca7" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 76 <repository changeset_revision="0efde9889efd" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
77 <package name="ncurses" version="6.0" /> | 77 <package name="ncurses" version="6.0" /> |
78 </repository> | 78 </repository> |
79 <repository changeset_revision="2ce32675340e" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | 79 <repository changeset_revision="466900d2014a" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> |
80 <package name="fontconfig" version="2.11.1" /> | 80 <package name="fontconfig" version="2.11.1" /> |
81 </repository> | 81 </repository> |
82 </action> | 82 </action> |
83 <action type="autoconf">--with-tcltk --with-blas --with-lapack --without-aqua --with-readline --with-cairo --with-libpng --without-x --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action> | 83 <action type="autoconf">--with-tcltk --with-blas --with-lapack --without-aqua --with-readline --with-cairo --with-libpng --without-x --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action> |
84 <action type="make_install" /> | 84 <action type="make_install" /> |
91 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable> | 91 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable> |
92 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable> | 92 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable> |
93 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> | 93 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> |
94 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> | 94 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> |
95 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> | 95 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> |
96 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> | 96 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> |
97 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> | 97 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> |
98 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> | 98 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> |
99 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 99 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
100 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> | |
100 </action> | 101 </action> |
101 </actions_group> | 102 </actions_group> |
102 </install> | 103 </install> |
103 <readme> | 104 <readme> |
104 The precompiled versions of this package were built 2015-07-27. | 105 The precompiled versions of this package were built 2015-07-27. |