Mercurial > repos > iuc > package_rnastar_2_4_0d

annotate tool_dependencies.xml @ 0:54c96a529c59 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
author iuc
date Mon, 18 May 2015 13:33:59 -0400
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54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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1 <?xml version="1.0"?>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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2 <tool_dependency>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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3 <package name="rnastar" version="2.4.0d">
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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4 <install version="1.0">
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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5 <actions>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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6 <action type="download_by_url">https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz</action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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7 <action type="shell_command">make</action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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8 <action type="make_directory">$INSTALL_DIR</action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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9 <action type="make_directory">$INSTALL_DIR/bin</action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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10 <action type="move_file">
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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11 <source>STAR</source>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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12 <destination>$INSTALL_DIR/bin</destination>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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13 </action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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14
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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15 <action type="set_environment">
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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17 </action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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18 <action type="set_environment">
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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19 <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
iuc
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20 </action>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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21 </actions>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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22 </install>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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23 <readme>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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24 Installs the STAR binary for rnastar - see https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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25 was https://code.google.com/p/rna-star/
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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26 </readme>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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27 </package>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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28 </tool_dependency>
54c96a529c59 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef
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