comparison tool_dependencies.xml @ 0:54c96a529c59 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_4_0d commit 13522d2ad2efbb8dab405723f491bd1a6591e3ef

0:54c96a529c59

<?xml version="1.0"?>
<tool_dependency>
    <package name="rnastar" version="2.4.0d">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="make_directory">$INSTALL_DIR</action>
                <action type="make_directory">$INSTALL_DIR/bin</action>
                <action type="move_file">
                    <source>STAR</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>

                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Installs the STAR binary for rnastar - see https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz
was https://code.google.com/p/rna-star/
        </readme>
    </package>
</tool_dependency>