Mercurial > repos > iuc > package_rnastructure_5_7
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author | iuc |
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date | Fri, 17 Jul 2015 11:08:11 -0400 |
parents | 0458908fa099 |
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<?xml version="1.0"?> <tool_dependency> <package name="rnastructure" version="5.7"> <install version="1.0"> <actions> <action type="download_by_url">http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz</action> <action type="shell_command">sed -i.bak "s/version = 5\.6/version = 5.7/" "./src/ParseCommandLine.cpp"</action> <action type="shell_command">make all</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/exe</environment_variable> <environment_variable action="set_to" name="DATAPATH">$INSTALL_DIR/data_tables</environment_variable> </action> </actions> </install> <readme> <![CDATA[ RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data. ]]> </readme> </package> </tool_dependency>