# HG changeset patch
# User iuc
# Date 1427395037 14400
# Node ID 5a621464e533abbb8477e7511307c2c7a9fe4afe

Imported from capsule None

diff -r 000000000000 -r 5a621464e533 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Mar 26 14:37:17 2015 -0400
@@ -0,0 +1,30 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="rnastructure" version="5.7">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz</action>
+                <action type="shell_command">make all</action>
+                <action type="shell_command">export INSTALL_DIR=$INSTALL_DIR ; make install</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/exe</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+<![CDATA[
+RNAstructure is a complete package for RNA and DNA secondary structure 
+prediction and analysis. It includes algorithms for   secondary structure 
+prediction, including facility to predict base pairing probabilities. It 
+also can be used to predict bimolecular structures and can predict the 
+equilibrium binding affinity of an oligonucleotide to a structured RNA 
+target. This is useful for siRNA design. It can also predict secondary 
+structures common to two, unaligned sequences, which is much more accurate 
+than single sequence secondary structure prediction. Finally, RNAstructure 
+can take a number of different types of experiment mapping data to constrain 
+or restrain structure prediction. These include chemical mapping, enzymatic 
+mapping, NMR, and SHAPE data.
+]]>
+        </readme>
+    </package>
+</tool_dependency>