Mercurial > repos > iuc > package_samtools_0_1_19
comparison tool_dependencies.xml @ 3:6b6b5498d9a2 draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 29 Apr 2014 14:05:11 -0400 |
| parents | b471600c8a3b |
| children | 279806044d60 |
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| 2:b471600c8a3b | 3:6b6b5498d9a2 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="ncurses" version="5.9"> | 3 <package name="ncurses" version="5.9"> |
| 4 <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="71e3f4bfd1a9" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="samtools" version="0.1.19"> | 6 <package name="samtools" version="0.1.19"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> | 9 <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> |
| 10 <action type="set_environment_for_install"> | 10 <action type="set_environment_for_install"> |
| 11 <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 11 <repository changeset_revision="71e3f4bfd1a9" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 12 <package name="ncurses" version="5.9" /> | 12 <package name="ncurses" version="5.9" /> |
| 13 </repository> | 13 </repository> |
| 14 </action> | 14 </action> |
| 15 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action> | 15 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action> |
| 16 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -L$NCURSES_LIB_PATH|g" Makefile</action> | 16 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> |
| 17 <action type="shell_command">make</action> | 17 <action type="shell_command">make</action> |
| 18 <action type="move_file"> | 18 <action type="move_file"> |
| 19 <source>samtools</source> | 19 <source>samtools</source> |
| 20 <destination>$INSTALL_DIR/bin</destination> | 20 <destination>$INSTALL_DIR/bin</destination> |
| 21 </action> | 21 </action> |