Mercurial > repos > iuc > package_samtools_1_0
comparison tool_dependencies.xml @ 1:2d1ce13600b5 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_samtools_1_0 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Fri, 17 Jul 2015 11:10:54 -0400 |
| parents | 063e42aeeba8 |
| children |
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| 0:063e42aeeba8 | 1:2d1ce13600b5 |
|---|---|
| 24 </repository> | 24 </repository> |
| 25 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | 25 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 26 <package name="zlib" version="1.2.8" /> | 26 <package name="zlib" version="1.2.8" /> |
| 27 </repository> | 27 </repository> |
| 28 </action> | 28 </action> |
| 29 <action type="shell_command">sed -i -e 's/-lcurses/-lncurses/' Makefile</action> | 29 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/' Makefile</action> |
| 30 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> | 30 <action type="shell_command">sed -i.bak -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action> |
| 31 <action type="shell_command">make</action> | 31 <action type="shell_command">make</action> |
| 32 <action type="move_file"> | 32 <action type="move_file"> |
| 33 <source>samtools</source> | 33 <source>samtools</source> |
| 34 <destination>$INSTALL_DIR/bin</destination> | 34 <destination>$INSTALL_DIR/bin</destination> |
| 35 </action> | 35 </action> |