Mercurial > repos > iuc > package_samtools_1_0

diff tool_dependencies.xml @ 1:2d1ce13600b5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_samtools_1_0 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 11:10:54 -0400
parents 063e42aeeba8
children
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--- a/tool_dependencies.xml	Tue May 19 15:02:01 2015 -0400
+++ b/tool_dependencies.xml	Fri Jul 17 11:10:54 2015 -0400
@@ -26,8 +26,8 @@
                             <package name="zlib" version="1.2.8" />
                         </repository>
                     </action>
-                    <action type="shell_command">sed -i -e 's/-lcurses/-lncurses/' Makefile</action>
-                    <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>
+                    <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/' Makefile</action>
+                    <action type="shell_command">sed -i.bak -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>
                     <action type="shell_command">make</action>
                     <action type="move_file">
                         <source>samtools</source>