Mercurial > repos > iuc > package_scikit_learn_0_13
comparison tool_dependencies.xml @ 4:3e4a1b4984f3 draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 19 Nov 2013 08:22:41 -0500 |
| parents | c46402299db3 |
| children | 2404fd8dc141 |
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| 3:c46402299db3 | 4:3e4a1b4984f3 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="lapack" version="3.4.2"> | |
| 4 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="numpy" version="1.7.1"> | 3 <package name="numpy" version="1.7.1"> |
| 7 <repository changeset_revision="796c0081adad" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="796c0081adad" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 8 </package> | 5 </package> |
| 9 <package name="scipy" version="0.12.0"> | 6 <package name="scipy" version="0.12.0"> |
| 10 <repository changeset_revision="d277bf006c3e" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="d277bf006c3e" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 11 </package> | 8 </package> |
| 12 <package name="matplotlib" version="1.2.1"> | 9 <package name="matplotlib" version="1.2.1"> |
| 13 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 10 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 14 </package> | 11 </package> |
| 15 | |
| 16 <package name="scikit_learn" version="0.13.1"> | 12 <package name="scikit_learn" version="0.13.1"> |
| 17 <install version="1.0"> | 13 <install version="1.0"> |
| 18 <actions> | 14 <actions> |
| 19 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> | 15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> |
| 20 <action type="set_environment_for_install"> | 16 <action type="set_environment_for_install"> |
| 34 | 30 |
| 35 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 31 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 36 <action language="cheetah" type="template_command"> | 32 <action language="cheetah" type="template_command"> |
| 37 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && | 33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && |
| 38 | 34 |
| 39 #if env.get('LAPACK_LIB_DIR', False): | |
| 40 export BLAS=$env.LAPACK_LIB_DIR/libblas.a && | |
| 41 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a && | |
| 42 #end if | |
| 43 | |
| 44 export PATH=\$PATH:$env.PATH_NUMPY && | 35 export PATH=\$PATH:$env.PATH_NUMPY && |
| 45 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && | 36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && |
| 46 | 37 |
| 47 python setup.py install --install-lib $env.INSTALL_DIR/lib/python | 38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python |
| 48 </action> | 39 </action> |
| 57 | 48 |
| 58 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | 49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> |
| 59 </action> | 50 </action> |
| 60 </actions> | 51 </actions> |
| 61 </install> | 52 </install> |
| 62 <readme>Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.</readme> | 53 <readme> |
| 54 Compiling scikit-learn requires a C compiler (typically gcc). | |
| 55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. | |
| 56 | |
| 57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies | |
| 58 </readme> | |
| 63 </package> | 59 </package> |
| 64 </tool_dependency> | 60 </tool_dependency> |