comparison tool_dependencies.xml @ 2:8379f21d9203 draft

remove atlas dependency
author bgruening
date Fri, 27 Sep 2013 17:33:54 -0400
parents 327319978a2f
children c46402299db3
comparison
equal deleted inserted replaced
1:327319978a2f 2:8379f21d9203
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="lapack" version="3.4.2"> 3 <package name="lapack" version="3.4.2">
4 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="atlas" version="3.10.1">
7 <repository changeset_revision="597c0e54eded" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="numpy" version="1.7.1"> 6 <package name="numpy" version="1.7.1">
10 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
11 </package> 8 </package>
12 <package name="scipy" version="0.12.0"> 9 <package name="scipy" version="0.12.0">
13 <repository changeset_revision="187102b578e3" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="303d29ec30e5" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
14 </package> 11 </package>
15 <package name="matplotlib" version="1.2.1"> 12 <package name="matplotlib" version="1.2.1">
16 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
17 </package> 14 </package>
18 15
19 <package name="scikit_learn" version="0.13.1"> 16 <package name="scikit_learn" version="0.13.1">
20 <install version="1.0"> 17 <install version="1.0">
21 <actions> 18 <actions>
22 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> 19 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action>
23 <action type="set_environment_for_install"> 20 <action type="set_environment_for_install">
24 <repository changeset_revision="597c0e54eded" name="package_atlas_3_10" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
25 <package name="atlas" version="3.10.1" />
26 </repository>
27 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 21 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
28 <package name="lapack" version="3.4.2" /> 22 <package name="lapack" version="3.4.2" />
29 </repository> 23 </repository>
30 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 24 <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
31 <package name="numpy" version="1.7.1" /> 25 <package name="numpy" version="1.7.1" />
32 </repository> 26 </repository>
33 <repository changeset_revision="187102b578e3" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 27 <repository changeset_revision="303d29ec30e5" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
34 <package name="scipy" version="0.12.0" /> 28 <package name="scipy" version="0.12.0" />
35 </repository> 29 </repository>
36 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 30 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
37 <package name="matplotlib" version="1.2.1" /> 31 <package name="matplotlib" version="1.2.1" />
38 </repository> 32 </repository>
40 34
41 <action type="make_directory">$INSTALL_DIR/lib/python</action> 35 <action type="make_directory">$INSTALL_DIR/lib/python</action>
42 <action language="cheetah" type="template_command"> 36 <action language="cheetah" type="template_command">
43 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp; 37 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
44 38
45 #if env.get('ATLAS_LIB_DIR', False):
46 export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a &amp;&amp;
47 #end if
48 #if env.get('LAPACK_LIB_DIR', False): 39 #if env.get('LAPACK_LIB_DIR', False):
49 export BLAS=$env.LAPACK_LIB_DIR/libblas.a &amp;&amp; 40 export BLAS=$env.LAPACK_LIB_DIR/libblas.a &amp;&amp;
50 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a &amp;&amp; 41 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a &amp;&amp;
51 #end if 42 #end if
52 43