Mercurial > repos > iuc > package_scikit_learn_0_14
annotate tool_dependencies.xml @ 5:4a79a4465418 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author | iuc |
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date | Fri, 17 Jul 2015 11:12:48 -0400 |
parents | d76a16fac22e |
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rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <package name="numpy" version="1.7.1"> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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4 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 5 </package> |
6 <package name="scipy" version="0.12.0"> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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7 <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 8 </package> |
9 <package name="matplotlib" version="1.2.1"> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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10 <repository changeset_revision="f4e53dfdd044" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
0 | 11 </package> |
12 <package name="scikit_learn" version="0.14.1"> | |
13 <install version="1.0"> | |
14 <actions> | |
15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.14.1.tar.gz</action> | |
16 <action type="set_environment_for_install"> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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17 <repository changeset_revision="5686c79a72d5" name="package_lapack_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 18 <package name="lapack" version="3.4.2" /> |
19 </repository> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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20 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 21 <package name="numpy" version="1.7.1" /> |
22 </repository> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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4
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23 <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 24 <package name="scipy" version="0.12.0" /> |
25 </repository> | |
5
4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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26 <repository changeset_revision="f4e53dfdd044" name="package_matplotlib_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
0 | 27 <package name="matplotlib" version="1.2.1" /> |
28 </repository> | |
29 </action> | |
30 | |
31 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
32 <action language="cheetah" type="template_command"> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && |
0 | 34 |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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35 export PATH=\$PATH:$env.PATH_NUMPY && |
0 | 36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && |
37 | |
38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python | |
39 </action> | |
40 <action type="set_environment"> | |
4 | 41 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
0 | 42 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
4 | 43 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
0 | 44 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> |
4 | 45 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> |
0 | 46 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> |
4 | 47 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> |
0 | 48 |
49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | |
50 </action> | |
51 </actions> | |
52 </install> | |
53 <readme> | |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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54 Compiling scikit-learn requires a C compiler (typically gcc). |
0 | 55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. |
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4a79a4465418
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_14 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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56 |
0 | 57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies |
58 </readme> | |
59 </package> | |
60 </tool_dependency> |