Mercurial > repos > iuc > package_scikit_learn_0_14
comparison tool_dependencies.xml @ 0:ef6c2c1cf49e draft
initial upload
author | iuc |
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date | Sun, 11 Aug 2013 06:54:10 -0400 |
parents | |
children | e20572fca87a |
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-1:000000000000 | 0:ef6c2c1cf49e |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="lapack" version="3.4.2"> | |
4 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="atlas" version="3.10.1"> | |
7 <repository changeset_revision="597c0e54eded" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 <package name="numpy" version="1.7.1"> | |
10 <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
11 </package> | |
12 <package name="scipy" version="0.12.0"> | |
13 <repository changeset_revision="aa5180c893f5" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
14 </package> | |
15 <package name="matplotlib" version="1.2.1"> | |
16 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
17 </package> | |
18 | |
19 <package name="scikit_learn" version="0.14.1"> | |
20 <install version="1.0"> | |
21 <actions> | |
22 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.14.1.tar.gz</action> | |
23 <action type="set_environment_for_install"> | |
24 <repository changeset_revision="597c0e54eded" name="package_atlas_3_10" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
25 <package name="atlas" version="3.10.1" /> | |
26 </repository> | |
27 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
28 <package name="lapack" version="3.4.2" /> | |
29 </repository> | |
30 <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
31 <package name="numpy" version="1.7.1" /> | |
32 </repository> | |
33 <repository changeset_revision="aa5180c893f5" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
34 <package name="scipy" version="0.12.0" /> | |
35 </repository> | |
36 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
37 <package name="matplotlib" version="1.2.1" /> | |
38 </repository> | |
39 </action> | |
40 | |
41 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
42 <action language="cheetah" type="template_command"> | |
43 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && | |
44 | |
45 #if env.get('ATLAS_LIB_DIR', False): | |
46 export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a && | |
47 #end if | |
48 #if env.get('LAPACK_LIB_DIR', False): | |
49 export BLAS=$env.LAPACK_LIB_DIR/libblas.a && | |
50 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a && | |
51 #end if | |
52 | |
53 export PATH=\$PATH:$env.PATH_NUMPY && | |
54 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && | |
55 | |
56 python setup.py install --install-lib $env.INSTALL_DIR/lib/python | |
57 </action> | |
58 <action type="set_environment"> | |
59 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
60 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
61 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
62 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
63 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> | |
64 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> | |
65 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> | |
66 | |
67 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | |
68 </action> | |
69 </actions> | |
70 </install> | |
71 <readme> | |
72 Compiling scikit-learn requires a C compiler (typically gcc). | |
73 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. | |
74 | |
75 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies | |
76 </readme> | |
77 </package> | |
78 </tool_dependency> |