Mercurial > repos > iuc > package_segemehl_0_2_0
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_segemehl_0_2_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author | iuc |
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date | Tue, 19 May 2015 15:02:44 -0400 |
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<?xml version="1.0"?> <tool_dependency> <package name="segemehl" version="0.2.0"> <install version="1.0"> <actions> <action type="download_by_url" target_filename="segemehl_0_2_0.tar.gz">http://www.bioinf.uni-leipzig.de/Software/segemehl/segemehl_0_2_0.tar.gz</action> <action type="change_directory">segemehl</action> <action type="shell_command">make</action> <action type="move_file"> <source>segemehl.x</source> <destination>$INSTALL_DIR</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> Short read mapping with gaps. To compile segemehl a C-compiler is needed, usually GCC. http://www.bioinf.uni-leipzig.de/Software/segemehl/ Please note that segemehl loads the whole index and genome files into memory. Segemehl's index is around 45GB in size, so the memory usage of that tool is huge. </readme> </package> </tool_dependency>