Mercurial > repos > iuc > package_segemehl_0_2_0

changeset 0:11cce9ae6cc6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_segemehl_0_2_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:02:44 -0400
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files tool_dependencies.xml
diffstat 1 files changed, 27 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 19 15:02:44 2015 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="segemehl" version="0.2.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="segemehl_0_2_0.tar.gz">http://www.bioinf.uni-leipzig.de/Software/segemehl/segemehl_0_2_0.tar.gz</action>
+                <action type="change_directory">segemehl</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>segemehl.x</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Short read mapping with gaps.
+            To compile segemehl a C-compiler is needed, usually GCC.
+            http://www.bioinf.uni-leipzig.de/Software/segemehl/
+
+            Please note that segemehl loads the whole index and genome files into memory.
+            Segemehl's index is around 45GB in size, so the memory usage of that tool is huge.
+        </readme>
+    </package>
+</tool_dependency>