annotate tool_dependencies.xml @ 0:8b7d6f6cb89b draft default tip

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<?xml version="1.0"?>
<tool_dependency>
    <package name="seqtk" version="1.0-r75-dirty">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone https://github.com/lh3/seqtk/ seqtk</action>
                <action type="shell_command">git reset --hard 08b3625c2a7aae3eca9ab056e1adea52ec22cbef</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>seqtk</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or
FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be
optionally compressed by gzip.
        </readme>
    </package>
</tool_dependency>