Mercurial > repos > iuc > package_snpeff_4_1
comparison tool_dependencies.xml @ 1:374c7f8421fb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_snpeff_4_1 commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
| author | iuc |
|---|---|
| date | Tue, 07 Jun 2016 10:01:11 -0400 |
| parents | cbf9c67cd731 |
| children |
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| 0:cbf9c67cd731 | 1:374c7f8421fb |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="snpEff" version="4.1"> | 3 <package name="snpEff" version="4.1"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="download_by_url">https://downloads.sourceforge.net/project/snpeff/snpEff_v4_1_core.zip</action> | 6 <action type="download_by_url" sha256sum="1d5b2831c631a175b88bac57aefddea6f79588ef2ccbac8505f66e0961e54bf5">https://downloads.sourceforge.net/project/snpeff/snpEff_v4_1l_core.zip</action> |
| 7 <action type="move_directory_files"> | 7 <action type="move_directory_files"> |
| 8 <source_directory>.</source_directory> | 8 <source_directory>.</source_directory> |
| 9 <destination_directory>$INSTALL_DIR</destination_directory> | 9 <destination_directory>$INSTALL_DIR</destination_directory> |
| 10 </action> | 10 </action> |
| 11 <action type="shell_command">sed -i.orig -e 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action> | 11 <action type="shell_command">sed -i.orig -e 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action> |