# HG changeset patch
# User iuc
# Date 1456834172 18000
# Node ID bb51af9130ea2df752495a9c9e722a6d575fcad4
# Parent  ab06c024070582b6577ce44825e455caeb78e89a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sra_toolkit_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328

diff -r ab06c0240705 -r bb51af9130ea tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Dec 06 09:04:27 2015 -0500
+++ b/tool_dependencies.xml	Tue Mar 01 07:09:32 2016 -0500
@@ -1,10 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="perl" version="5.18.1">
-        <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libmagic" version="5.25">
+        <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="ncbi_vdb" version="2.5.2">
-        <repository changeset_revision="b980182ad267" name="package_ncbi_vdb_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="17ae6c0040ea" name="package_ncbi_vdb_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="ngs_sdk" version="1.1.3">
         <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
@@ -14,10 +17,13 @@
             <actions>
                 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
-                    <repository changeset_revision="b980182ad267" name="package_ncbi_vdb_2_5_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="libmagic" version="5.25" />
+                    </repository>
+                    <repository changeset_revision="17ae6c0040ea" name="package_ncbi_vdb_2_5_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="ncbi_vdb" version="2.5.2" />
                     </repository>
                     <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
@@ -25,10 +31,7 @@
                     </repository>
                 </action>
                 <action type="shell_command">
-                    ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build
-                </action>
-                <action type="shell_command">
-                    sed -i -e "109s/-static//" tools/copycat/Makefile
+                    ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR
                 </action>
                 <action type="make_install" />
                 <action type="set_environment">