Mercurial > repos > iuc > package_stacks_1_40

diff tool_dependencies.xml @ 2:95cffefc0dfe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stacks_1_40 commit 6b38bb0f0d7e65b01680a4b56bf8a996c445e58f
author iuc
date Wed, 15 Jun 2016 06:22:39 -0400
parents 0beed64123fb
children 51d4ab2c4dcf
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--- a/tool_dependencies.xml	Wed Jun 15 05:37:51 2016 -0400
+++ b/tool_dependencies.xml	Wed Jun 15 06:22:39 2016 -0400
@@ -7,6 +7,13 @@
         <install version="1.0">
             <actions>
                 <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks_1.40_src_all.tar.gz</action>
+
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="samtools" version="0.1.19" />
+                    </repository>
+                </action>
+
                 <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action>
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>