Mercurial > repos > iuc > package_stacks_1_40
changeset 0:5eac5e2d91e2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stacks_1_40 commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
| author | iuc |
|---|---|
| date | Tue, 14 Jun 2016 14:01:20 -0400 |
| parents | |
| children | 0beed64123fb |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jun 14 14:01:20 2016 -0400 @@ -0,0 +1,24 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="samtools" version="0.1.19"> + <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="stacks" version="1.40"> + <install version="1.0"> + <actions> + <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks-1.40_src_all.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + <!-- create env.sh --> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable> + <environment_variable action="set_to" name="STACKS_ROOT_DIR">$INSTALL_DIR/</environment_variable> + </action> + </actions> + </install> + <readme> + This package installs STACKS from the sources available. Based on Cyril Monjeuad version + </readme> + </package> +</tool_dependency>