Mercurial > repos > iuc > package_stringtie_1_0_1
diff tool_dependencies.xml @ 0:cd94bd10219b draft default tip
Uploaded tool dependency definition.
| author | iuc |
|---|---|
| date | Thu, 05 Mar 2015 10:52:50 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Mar 05 10:52:50 2015 -0500 @@ -0,0 +1,41 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="stringtie" version="1.0.1"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.Linux_x86_64.tar.gz</action> + <action type="move_file"> + <source>stringtie</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + </actions> + <actions architecture="x86_64" os="darwin"> + <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.OSX_x86_64.tar.gz</action> + <action type="move_file"> + <source>stringtie</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + </actions> + <actions> + <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.tar.gz</action> + <action type="shell_command">make release</action> + <action type="move_file"> + <source>stringtie</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + </actions> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme>StringTie is a fast and highly efficient assembler of RNA-Seq + alignments into potential transcripts. It is primarily a genome-guided + transcriptome assembler, although it can borrow algorithmic techniques + from de novo genome assembly to help with transcript assembly. Its input + can include not only the spliced read alignments used by reference-based + assemblers, but also longer contigs that were assembled de novo from + unambiguous, non-branching parts of a transcript.</readme> + </package> +</tool_dependency>