Mercurial > repos > iuc > package_stringtie_1_0_4
comparison tool_dependencies.xml @ 0:f3818f4bc127 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stringtie_1_0_4 commit ba7b53894c61fea9a93550f865e9ed2753a904cf
author | iuc |
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date | Wed, 12 Aug 2015 07:05:58 -0400 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="stringtie" version="1.0.4"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <actions architecture="x86_64" os="linux"> | |
7 <action type="download_by_url" sha256sum="03ad436e24daa54ef6b06a393e46e7173488f5a36da888a864d6ab7867ac798c"> | |
8 http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.4.Linux_x86_64.tar.gz | |
9 </action> | |
10 <action type="move_file"> | |
11 <source>stringtie</source> | |
12 <destination>$INSTALL_DIR/bin</destination> | |
13 </action> | |
14 </actions> | |
15 <actions architecture="x86_64" os="darwin"> | |
16 <action type="download_by_url" sha256sum="b50648a23cf0957fb25d34d3497bfe4cd270977272e4f6c7ea3da10c99dc7692"> | |
17 http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.4.OSX_x86_64.tar.gz | |
18 </action> | |
19 <action type="move_file"> | |
20 <source>stringtie</source> | |
21 <destination>$INSTALL_DIR/bin</destination> | |
22 </action> | |
23 </actions> | |
24 <actions> | |
25 <action type="download_by_url" sha256sum="635099d543bfaf0ec1c84020eb4aa3375714c12e2d0d435dae44901d49fe3ef2"> | |
26 http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.4.tar.gz | |
27 </action> | |
28 <action type="shell_command">make release</action> | |
29 <action type="move_file"> | |
30 <source>stringtie</source> | |
31 <destination>$INSTALL_DIR/bin</destination> | |
32 </action> | |
33 </actions> | |
34 <action type="set_environment"> | |
35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
36 <environment_variable action="set_to" name="STRINGTIE_ROOT_PATH">$INSTALL_DIR</environment_variable> | |
37 </action> | |
38 </actions_group> | |
39 </install> | |
40 <readme>StringTie is a fast and highly efficient assembler of RNA-Seq | |
41 alignments into potential transcripts. It is primarily a genome-guided | |
42 transcriptome assembler, although it can borrow algorithmic techniques | |
43 from de novo genome assembly to help with transcript assembly. Its input | |
44 can include not only the spliced read alignments used by reference-based | |
45 assemblers, but also longer contigs that were assembled de novo from | |
46 unambiguous, non-branching parts of a transcript.</readme> | |
47 </package> | |
48 </tool_dependency> |