Mercurial > repos > iuc > package_subread_1_4_6_p5
annotate tool_dependencies.xml @ 0:3645871df985 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
| author | iuc |
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| date | Fri, 01 Jul 2016 03:15:22 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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1 <?xml version="1.0"?> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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2 <tool_dependency> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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3 <package name="subread" version="1.4.6p5"> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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4 <install version="1.0"> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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5 <actions> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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6 <action type="download_by_url" |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
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7 sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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8 <action type="shell_command"><![CDATA[ |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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9 cd src/ && make -f Makefile.Linux |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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10 ]]></action> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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11 <action type="move_directory_files"> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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12 <source_directory>bin</source_directory> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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13 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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14 </action> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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15 <action type="set_environment"> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/utilities</environment_variable> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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18 </action> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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19 </actions> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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20 </install> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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21 <readme> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
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22 Downloads and installs the Subread package containing: |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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23 - exactSNP |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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24 - featureCounts |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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25 - subindel |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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26 - subjunc |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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27 - subread-align |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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28 - subread-buildindex |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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29 |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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30 with the corresponding utilities: |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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31 * coverageCount |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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32 * globalReassembly |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
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33 * propmapped |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
diff
changeset
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34 * qualityScores |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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35 * removeDup |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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36 * subread-fullscan |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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37 * subtools |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
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38 |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
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39 http://subread.sourceforge.net/ |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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changeset
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40 </readme> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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41 </package> |
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3645871df985
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
iuc
parents:
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42 </tool_dependency> |