Mercurial > repos > iuc > package_subread_1_4_6_p5
comparison tool_dependencies.xml @ 0:3645871df985 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
author | iuc |
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date | Fri, 01 Jul 2016 03:15:22 -0400 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="subread" version="1.4.6p5"> | |
4 <install version="1.0"> | |
5 <actions> | |
6 <action type="download_by_url" | |
7 sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action> | |
8 <action type="shell_command"><![CDATA[ | |
9 cd src/ && make -f Makefile.Linux | |
10 ]]></action> | |
11 <action type="move_directory_files"> | |
12 <source_directory>bin</source_directory> | |
13 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
14 </action> | |
15 <action type="set_environment"> | |
16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/utilities</environment_variable> | |
18 </action> | |
19 </actions> | |
20 </install> | |
21 <readme> | |
22 Downloads and installs the Subread package containing: | |
23 - exactSNP | |
24 - featureCounts | |
25 - subindel | |
26 - subjunc | |
27 - subread-align | |
28 - subread-buildindex | |
29 | |
30 with the corresponding utilities: | |
31 * coverageCount | |
32 * globalReassembly | |
33 * propmapped | |
34 * qualityScores | |
35 * removeDup | |
36 * subread-fullscan | |
37 * subtools | |
38 | |
39 http://subread.sourceforge.net/ | |
40 </readme> | |
41 </package> | |
42 </tool_dependency> |